Author Archive for Pharyngula

Ham is rich in irony

The LA Times did a story on those wacky Catholic geocentrists who read the Bible and insist that, by a literal interpretation of the words therein, the earth must be at the center of the universe, with everything else rotating about it. They quote verses and everything, so actually, in a very literal sense, they're right that the Bible does imply a very strange folk physics. But the story had to go further, and got a quote from…Ken Ham.

Ken Ham.

I guess it's kind of appropriate. You're doing a story about goofy literalist lunatics, and he is one of the biggest. But still, it seems like there ought to be some recognition that one is digging into a dunghill for weird quotes when you pick up the phone and call Answers in Genesis.

"There's a big difference between looking at the origin of the planets, the solar system and the universe and looking at presently how they move and how they are interrelated," Ham said. "The Bible is neither geocentric or heliocentric. It does not give any specific information about the structure of the solar system."

Ham is usually adamant that one must interpret the Bible literally, word by word, but I guess this is a case that shows he's actually one of those cafeteria Christians.

If he's going to bend on this, though, I have to point out that the chapters of Genesis that he relies on for his insistence on a young earth are very brief, contain no detail and vast amounts of ambiguity, and that the Bible is also silent on how species are structured and interrelated. If he insists on using it as a science text to discuss biology, a topic that is not at all emphasized or even properly described in the book, I don't think he can complain at another fringe religious group that decides to use it as an astronomy textbook — they're both doing exactly the same thing.

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Mary’s Monday Metazoan: Titillating titles

Someone had to know what they were doing, mixing "flash", "tits", and "sperm" all in one short title, "Flashier Great Tits Produce Stronger Sperm, Bird Study Shows". I don't care what the article said, I'm currently having palpitations and am having trouble focusing on my work.

tit.jpeg

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Bacterial fossil doubts resolved

I raised a few questions about those 3.4 billion year old bacterial fossils, primarily that I was bugged by the large size and that they cited a discredited source to say that they were in the appropriate range of diameters for bacteria. Now my questions have been answered by Chris Nedin, and I'm satisfied. In particular, he shows data from 0.8 and 1.9 billion year old fossils in which the bacterial sizes are in the same range. It's also a good review of the other evidence used to infer that they actually are bacterial microfossils.

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Rats emboldened by Rick Perry

So Bryan Fischer came out swinging like a lunkhead, and now Ann Coulter scurries out to try and get in a sucker punch. Neither are very effective.

Roughly one-third of my 2006 No. 1 New York Times best-seller, "Godless: The Church of Liberalism," is an attack on liberals' creation myth, Darwinian evolution. I presented the arguments of all the luminaries in the field, from the retarded Richard Dawkins to the brilliant Francis Crick, and disputed them.

But apparently liberals didn't want to argue back.

I do, I do! I read Godless — it was appallingly bad, packed full of very poor rants made in complete ignorance of the science. I even challenged Coulter fans to pick out their favorite paragraph for me to dissect…and none stepped forward. Maybe there are no Coulter fans. Or maybe they're smarter than she is.

She's apparently going to do a series of columns exposing the weaknesses of evolution. This week, she holds her banner high for irreducible complexity.

Most devastating for the Darwiniacs were advances in microbiology since Darwin's time, revealing infinitely complex mechanisms requiring hundreds of parts working together at once -- complex cellular structures, DNA, blood-clotting mechanisms, molecules, and the cell's tiny flagellum and cilium.

"Microbiology"?

"Microbiology"?!?!

It wasn't microbiologists who worked out the structure of DNA. She apparently believes microbiology is the field that studies itty-bitty little things. It's so cute to see someone so ignorant sit there and glibly type out such revealing nonsense. I've had students do that — it's a sign that they deserve to fail.

Or how about this?

Thanks to advances in microscopes, thousands of such complex mechanisms have been found since Darwin's day. He had to explain only simple devices, such as beaks and gills. If Darwin were able to come back today and peer through a modern microscope to see the inner workings of a cell, he would instantly abandon his own theory.

Bwahahahaha! How many of you molecular biologists do all your work by peering into a microscope? Oh, look, did you see that Notch molecule bind to Delta? Hey, there goes the cytoplasmic element, activating a transduction cascade! Do you also use your microscope to read off the sequence of nucleotides in the DNA coiled in the nucleus? Such a silly naif.

Aside from the ignorant gaffes, though, here's the rotten heart of her argument.

It is a mathematical impossibility, for example, that all 30 to 40 parts of the cell's flagellum -- forget the 200 parts of the cilium! -- could all arise at once by random mutation. According to most scientists, such an occurrence is considered even less likely than John Edwards marrying Rielle Hunter, the "ground zero" of the impossible.

Nor would each of the 30 to 40 parts individually make an organism more fit to survive and reproduce, which, you will recall, is the lynchpin of the whole contraption.

No one argues that they all arose instantly in a flash in full functioning order. Oh, wait, there are some who do: the creationists. No legitimate biologist is that stupid. Her claim that the individual components can contribute no incremental benefit is nothing but an assertion from a non-biologist with no knowledge of biology; I recommend Ian Musgrave's article on the evolution of the flagellum that describes transitional forms and the combination of components involved, as well as refuting the simplistic notions of what a flagellum does that most creationists have.

Dembski has claimed that, as the eubacterial flagellum is irreducibly complex, he can eliminate explanations based on natural law for the origin of the flagellum. This conclusion is wrong for two reasons: (1) Being IC does not eliminate indirect evolutionary explanations, and flagella can evolve from simpler systems through a series of functional intermediates. Further, (2) eubacterial flagella are not the " outboard motors" that Dembski envisages, but rather organelles that are involved in swimming, gliding motility, attachment, and secretion. They occupy one end of a range of secretion-based motility systems in bacteria of varying complexity, and several existing intermediate stages show how the flagellum could well have arisen by evolution and natural selection.

Coulter has a BA in history and a law degree. She hasn't even done any research on the biology she's critiquing; she only parrots creationist sources. Liberals aren't afraid to argue evolution with her, but instead see her as an unqualified, clueless twit who isn't even capable of addressing the actual substance of an argument.

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Bryan Fischer and the dogmatic incantations

I'm getting too old for this. The idiots keep making the same arguments, over and over again, and they just get dumber with every iteration. Bryan Fischer makes me want to stick an icepick in my brain just to stop the stupidity coming out of his mouth.

His latest article is Defeating Darwin in four steps…and I read the title and instantly predicted what his four objections would be before I even looked at the first sentence — I'd apply for Randi's million dollar challenge, except reading the mind of a droning cretin isn't much of a challenge.

You really need to listen to Fischer's awful radio show, just for the schlocky thrill of his sing-songy chant of "First Law, Second Law, Fossils, Genes". It's a high quality, potent emetic.

Here are his four magic arguments:

  1. First Law of Thermodynamics. This law (note: not a theory but a scientific law) teaches us that matter and energy can neither be created nor destroyed. In other words, an honest scientist will tell you that there is nothing in the observable universe that can explain either the origin of energy or matter. By logical extension, then, matter and energy had to come into being by some force outside the universe.

    What this means, then, is that science simply has no explanation for the most basic question that could possibly be asked: why is there something rather than nothing?

    Actually, I didn't guess this one exactly right — I thought he'd say something about abiogenesis, that we don't know how life started. Unfortunately, Fischer was even more idiotic than I thought he'd be: the origin of the universe is a physics problem, and is not a matter explained at all by biological evolution, so this is completely irrelevant.

    This is a common creationist claim, though, that the Big Bang violates the first law of thermodynamics. These gomers don't understand thermodynamics so it's silly for them to rely on it. Ask a physicist; the Big Bang doesn't violate thermodynamics.

    This negative gravitational potential energy exactly cancels out the positive energy of the universe. As Stephen Hawking says in his book A Brief History of Time (quoted by Victor Stenger, Has Science Found God?, p. 148): "In the case of a universe that is approximately uniform in space, one can show that this negative gravitational energy exactly cancels the positive energy represented by the matter. So the total energy of the universe is zero." In other words, it is not the case that something came out of nothing. It is that we have always had zero energy.

  2. Second Law of Thermodynamics. This law (note: not a theory but a law) teaches us that in every chemical or heat reaction, there is a loss of energy that never again is available for another heat reaction. This is why things break down if left to themselves, and why scientists tell us that the universe is headed toward a heat death.

    This law teaches us, then, that the universe is headed toward increasing randomness and decay.

    But what does the theory of evolution teach us? The exact opposite, that the universe is headed toward increasing complexity and order. You put up a scientific theory against my scientific law, I'm going to settle for the law every time, thank you very much.

    I knew this one was coming. Again, creationists don't understand thermodynamics at all, and this is a beautiful example. Nothing violates the second law. Every gain in complexity in biology is matched by an even greater increase in entropy. I was once a tiny single cell, and I have increased in complexity and bulk over the years by chowing down on a mountain of high-energy food and turning it into a mountain of low-energy poop. It's the same story with the bigger scale of evolution: it's ultimately been driven by immense masses of hydrogen fusing in the heart of our star. Far more energy was burned by the sun than was harvested and used in all the history of life, so there is no net gain in the energy of the whole system.

  3. Fossils. Realize that the fossil record is the only tangible, physical evidence for the theory of evolution that exists. The fossil record is it. There is absolutely nothing else Darwinians have they can show you.

    As Yale University's Carl Dunbar says, "Fossils provide the only historical, documentary evidence that life has evolved from simpler to more and more complex forms."

    But if Darwin's theory is correct, that increasingly complex life forms developed in tiny little incremental and transitional steps, then the fossil record should by littered with an enormous number of transitional fossils.

    Another predictable and stupid claim. We've got lots of transitional fossils. We look in the fossil record, and find entire ecosystems that no longer exist and have changed in radical ways. This is Fischer just sticking his fingers in his ears and shouting "la la la la".

    The quote from Carl Dunbar is revealing. If you're like me, you're asking "who the heck is Carl Dunbar, and why should I care?" This one is a double-whammy against the creationists, though: Carl Dunbar was born in 1891, so once again they're desperately scrambling to find some authority, any authority, to back up their claims. The other problem for the creationists, though, is the quote itself. Read it. Does this actually say there's a problem with the fossil record? No, it does not. Dunbar was a well-known invertebrate paleontologist 50 years ago, who published many papers illustrating the pattern of transitions in the stratigraphic record.

    He's probably be very surprised to hear that creationists now cite his work vaguely and with no comprehension as evidence against evolution. I guarantee you, too, that Fischer knows nothing about Dunbar's work, and only cites him because he found other creationist sites that quote-mined him.

  4. Genes. The only mechanism -- don't miss this -- the only mechanism evolutionists have to explain the development of increasingly complex life forms is genetic mutation. Mutations alter DNA, and these alterations can be passed on to descendants.

    The problem: naturally occurring genetic mutations are invariably harmful if not fatal to the organism. Rather than improve an organism's capacity to survive, they invariably weaken it. That's why the phrase we most often use to refer to genetic mutations is "birth defects."

    Bryan Fischer is completely wrong here: he's stating as a fact that mutations are invariably deleterious, and this is simply not true. Most are neutral. Some are advantageous, and all it takes is one counterexample to show that his absolutist statements are wrong. I'd say he's lying, but I know what a lot of people would say: "he's not literally lying, he's just ignorant". But this is something we need a better word for: he's stating as a certainty a false 'fact', acting as an authority in a field he actually knows nothing about, and is intentionally promoting a counterfactual to advance an ideology. He's a disinformation agent, sowing propaganda: it's worse than lying.

That's enough inanity. I'm done. I really hope, though, that someday someone comes up to me chanting "First Law, Second Law, Fossils, Genes" just like Bryan Fischer so I can kick their dumb ass.

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Friday Cephalopod: Why you should avoid intimacy with a squid

squidhooks.jpeg

(via Te Ara Encyclopedia of New Zealand)

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It’ll never happen

The pair of psychic frauds, James van Praagh and Allison DuBois, who were featured on Nightline, have been called out by the JREF:

The JREF's Million Dollar Challenge Director, Banachek, also featured in the episode, said, "We're issuing a challenge to these fakers: for once, show that you can get this supposedly supernatural knowledge without cheating. If one of you can demonstrate your 'psychic' abilities on randomly chosen strangers—not celebrities—under mutually-agreed conditions, without relying on known cold-reading techniques such as fishing around with vague questions, and without just using Google—we will donate our million dollars to you or to the charity of your choice."

You know Van Praagh and DuBois will never, ever risk exposure of their profitable scams by subjecting themselves to tests.

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Coulter revisited

Ann Coulter is a horrible, ignorant person who once wrote a whole book accusing liberals of being Godless, as if that were an insult, and advancing arguments against evolution that made the standard noisy creationist look like a veritable scholar. I looked at her arguments, and I made a public challenge back in 2006 for any defenders to pick one paragraph from the book and we'd discuss it in detail — there have been no takers, not one person willing to stand up and support in detail any claim she had made. She also made some amazingly inane arguments: did you know that one strike against evolution is that the people who study it are mere biologists, which is not really a science, and that there are more women working in biology than, say, physics?

I was tearing into her quite regularly for a while there after that book came out. She was such an easy target.

But no matter. I'm acutely envious of Carl Zimmer, who Coulter regards as a giant flatulent raccoon. Man, I would love to have that on my résumé. Alas, Coulter has no idea who I am, so I'm not going to get that recognition.

By the way, the Coulter challenge is still open, and has been for five years. All anyone has to do is pick one paragraph, any paragraph, from her evolution chapters in Godless, and post it with a defense of its accuracy. That shouldn't be so hard, should it? She wrote this whole book, I'm letting you pick the very best, most solid, strongest argument against evolution from it and present it here to stump us all. It's strange that no one has managed to do that in all this time.

(By the way, as is usual whenever I mention Coulter, there will be petty people who will sneer at her appearance or make ugly remarks about her sexuality. Do not do that. I will cut you.)

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Triumph in Canada

Remember that silly blood type nonsense from the Canadian Blood Services? It's gone, replaced with a much simpler page that states that your blood type will be determined when you give blood.

A few people have received email from CBS admitting that they've removed the nonsense.

Dr. Sher has asked me to respond to your recent e-mail regarding our What's Your Type? new donor recruitment program. I understand that you have also sent an e-mail communicating your concerns to www.whatsyourtype@blood.ca and that others from our organization have provided you with specific details in response. I can confirm that the content you object to has been removed from our web site. The marketing materials for this program are being revised.

Thanks again for sharing your views with us.

Ian Mumford
Chief Operating Officer
Canadian Blood Services

Good for them. Science FTW!

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Paula Kirby tells the same story

I don't know how we can get any plainer than this: evolution really happened and is happening.

Evolution is a simple fact. We can choose to remain ignorant of it, we can stick our fingers in our ears and refuse to think about it, we can even rail against it and shout and scream that it is not allowed to be true. But facts are facts, and will not go away just because we don't like them. We don't get to vote for our preferred method of having come into existence as a species, any more than we can choose to have been delivered by stork rather than conceived and born in the usual way.

Candidates who stick their fingers in their ears and reject reality simply don't deserve to hold office.

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Not you too, New Zealand?

Let's imagine that you, a rational person, are a high muckety-muck in some prestigious scientific institution — like, say, the Royal Society of New Zealand — and you're asked whether some fringe subject — like, say, Traditional Chinese Medicine — should receive the endorsement of your society. How would you determine your answer?

If you're anything like me, you'd go to experts and ask, "Is there good evidence that this really works? Is it a subject we should pursue in greater depth?"

Not the Royal Society of New Zealand, though. No, forget all that business of whether TCM actually works, or even does harm: instead, they hired a consultant psychologist who interviewed 30 people and asked them whether they'd used TCM. Their conclusion:

The Society recommends that TCM should become a registered profession and that registered practitioners should be clinically well qualified.

It apparently doesn't matter whether it works or not, and the fact that it can cause harm was actually used to support endorsing it in a fine piece of topsy-turvy logic.

There is the potential of harm from the practice of TCM. Apart from the risks already outlined in the proposal document, clients consulting TCM practitioners are at risk of delayed diagnosis and treatment of their conditions, which can carry significant consequences. It is possible that an occult fracture is missed in a client consulting a TCM practitioner for foot pain, or early meningococcal disease overlooked in a client with fevers and general malaise.

Regulation of TCM will ensure that all TCM practitioners are aware of the limitation of their service, and to know when to refer clients to another health service if necessary. Improper practice of TCM, such as tuina (massage therapy) and tei-da (practice of bone-setting), has been shown to induce physical damage (e.g. joint dislocation, spindle damage, deep tissue/muscle damage) to the patients and some herbal medicine may also not be suitable for pregnant women. It will therefore be important to ensure that registered TCM practitioners are responsible and clinically well qualified.

I have decided that chewing broken glass is a cure for cancer. It is irrelevant whether it actually does so; it does cause severe bleeding and oral and throat damage, though, so I'm moving to New Zealand, where that will be cause to officially recognize and register my practice, so that the state can better protect my patients from harm.

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The wellspring of grade inflation

I hate to discourage teachers (we need them!), but there's a problem in teacher education.

Well, guess which students earn the highest grades? It's future teachers. According to a new study by Cory Koedel published by the American Enterprise Institute:

Students who take education classes at universities receive significantly higher grades than students who take classes in every other academic discipline. The higher grades cannot be explained by observable differences in student quality between education majors and other students, nor can they be explained by the fact that education classes are typically smaller than classes in other academic departments.

This is despite the fact that education majors have the lowest high school grades and standardized test scores of all college students.

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Are you still having problems with Freethoughtblogs?

People are still reporting that they can't see current content on the new site. The reason for this is that there was a temporary error in the code which told the browser to cache and essentially never refresh the page from the web. This problem has been corrected, but you've still got a bad copy of the page cached on your local computer, and it doesn't know that it's been fixed.

I'm promoting a comment from David Marjanovic:

Rick, you have the well-known cache problem. Refresh. If that doesn't help, try Shift+F5 or Ctrl+F5. If that still doesn't work, burrow through the menu of your browser and look for how to clear your cache.

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The strength of Dawkins, and the murk of accommodationism

Richard Dawkins hits this one out of the park: he slams the ignorance of Rick Perry specifically and the Republican party generally. There is no excuse for the foolishness we get from Perry, or Bachmann, or Huckabee, or Palin, or Robertson, or any of the candidates who have sought validation through the Republicans — it's as if they're selecting for stupidity.

There is nothing unusual about Governor Rick Perry. Uneducated fools can be found in every country and every period of history, and they are not unknown in high office. What is unusual about today's Republican party (I disavow the ridiculous 'GOP' nickname, because the party of Lincoln and Theodore Roosevelt has lately forfeited all claim to be considered 'grand') is this: In any other party and in any other country, an individual may occasionally rise to the top in spite of being an uneducated ignoramus. In today's Republican Party 'in spite of' is not the phrase we need. Ignorance and lack of education are positive qualifications, bordering on obligatory. Intellect, knowledge and linguistic mastery are mistrusted by Republican voters, who, when choosing a president, would apparently prefer someone like themselves over someone actually qualified for the job.

Any other organization -- a big corporation, say, or a university, or a learned society - -when seeking a new leader, will go to immense trouble over the choice. The CVs of candidates and their portfolios of relevant experience are meticulously scrutinized, their publications are read by a learned committee, references are taken up and scrupulously discussed, the candidates are subjected to rigorous interviews and vetting procedures. Mistakes are still made, but not through lack of serious effort.

The population of the United States is more than 300 million and it includes some of the best and brightest that the human species has to offer, probably more so than any other country in the world. There is surely something wrong with a system for choosing a leader when, given a pool of such talent and a process that occupies more than a year and consumes billions of dollars, what rises to the top of the heap is George W Bush. Or when the likes of Rick Perry or Michele Bachmann or Sarah Palin can be mentioned as even remote possibilities.

A politician's attitude to evolution is perhaps not directly important in itself. It can have unfortunate consequences on education and science policy but, compared to Perry's and the Tea Party's pronouncements on other topics such as economics, taxation, history and sexual politics, their ignorance of evolutionary science might be overlooked. Except that a politician's attitude to evolution, however peripheral it might seem, is a surprisingly apposite litmus test of more general inadequacy. This is because unlike, say, string theory where scientific opinion is genuinely divided, there is about the fact of evolution no doubt at all. Evolution is a fact, as securely established as any in science, and he who denies it betrays woeful ignorance and lack of education, which likely extends to other fields as well. Evolution is not some recondite backwater of science, ignorance of which would be pardonable. It is the stunningly simple but elegant explanation of our very existence and the existence of every living creature on the planet. Thanks to Darwin, we now understand why we are here and why we are the way we are. You cannot be ignorant of evolution and be a cultivated and adequate citizen of today.

Darwin's idea is arguably the most powerful ever to occur to a human mind. The power of a scientific theory may be measured as a ratio: the number of facts that it explains divided by the number of assumptions it needs to postulate in order to do the explaining. A theory that assumes most of what it is trying to explain is a bad theory. That is why the creationist or 'intelligent design' theory is such a rotten theory.

What any theory of life needs to explain is functional complexity. Complexity can be measured as statistical improbability, and living things are statistically improbable in a very particular direction: the direction of functional efficiency. The body of a bird is not just a prodigiously complicated machine, with its trillions of cells - each one in itself a marvel of miniaturized complexity - all conspiring together to make muscle or bone, kidney or brain. Its interlocking parts also conspire to make it good for something - in the case of most birds, good for flying. An aero-engineer is struck dumb with admiration for the bird as flying machine: its feathered flight-surfaces and ailerons sensitively adjusted in real time by the on-board computer which is the brain; the breast muscles, which are the engines, the ligaments, tendons and lightweight bony struts all exactly suited to the task. And the whole machine is immensely improbable in the sense that, if you randomly shook up the parts over and over again, never in a million years would they fall into the right shape to fly like a swallow, soar like a vulture, or ride the oceanic up-draughts like a wandering albatross. Any theory of life has to explain how the laws of physics can give rise to a complex flying machine like a bird or a bat or a pterosaur, a complex swimming machine like a tarpon or a dolphin, a complex burrowing machine like a mole, a complex climbing machine like a monkey, or a complex thinking machine like a person.

Darwin explained all of this with one brilliantly simple idea - natural selection, driving gradual evolution over immensities of geological time. His is a good theory because of the huge ratio of what it explains (all the complexity of life) divided by what it needs to assume (simply the nonrandom survival of hereditary information through many generations). The rival theory to explain the functional complexity of life - creationism - is about as bad a theory as has ever been proposed. What it postulates (an intelligent designer) is even more complex, even more statistically improbable than what it explains. In fact it is such a bad theory it doesn't deserve to be called a theory at all, and it certainly doesn't deserve to be taught alongside evolution in science classes.

The simplicity of Darwin's idea, then, is a virtue for three reasons. First, and most important, it is the signature of its immense power as a theory, when compared with the mass of disparate facts that it explains - everything about life including our own existence. Second, it makes it easy for children to understand (in addition to the obvious virtue of being true!), which means that it could be taught in the early years of school. And finally, it makes it extremely beautiful, one of the most beautiful ideas anyone ever had as well as arguably the most powerful. To die in ignorance of its elegance, and power to explain our own existence, is a tragic loss, comparable to dying without ever having experienced great music, great literature, or a beautiful sunset.

There are many reasons to vote against Rick Perry. His fatuous stance on the teaching of evolution in schools is perhaps not the first reason that springs to mind. But maybe it is the most telling litmus test of the other reasons, and it seems to apply not just to him but, lamentably, to all the likely contenders for the Republican nomination. The 'evolution question' deserves a prominent place in the list of questions put to candidates in interviews and public debates during the course of the coming election.

That Dawkins took to clearly stating exactly what was wrong with these bad anti-science candidates doesn't sit well with some people. Jamie Vernon at the Intersection (of course) thinks his opinion piece was an ineffective violation of all that the mush-brained accommodationists hold dear.

In one short paragraph, Dr. Dawkins has violated nearly everything we have come to know about effective science communication. I cannot, for the life of me, understand how Dr. Dawkins believes hurling insults, like "uneducated fools" and "ignoramus," can advance his position. How far do you think readers of the opposite mind continued into this article?

Oh, man. These clowns always practice industrial grade irony. If describing Perry in unflattering terms in the first paragraph is a barrier, what is the fact that Vernon called Dawkins a "crotchety old man" in the freakin' title of his post? I don't mind if the softies want to try their supposedly subtler, more psychologically informed tactics on the opposition, but somehow they never do — Vernon doesn't do anything to persuade Perry, and doesn't even suggest alternatives — and instead they always resort to hectoring activists who do speak their mind. It's impossible to avoid the conclusion that all they want is passivity and silence, and that they just love wallowing in hypocrisy.

So get out there, Mr Vernon. What are you doing to inform people of the disastrous ignorance of Rick Perry? What are you doing to oppose his candidacy? Are you even willing to state that he's unfit for office, and why? Don't you think evolution-denial is a very good marker for science illiteracy?

This is precisely what infuriates me. We have a functional moron running for the presidency, and a small crop of presumably pro-science people are busily trying to shush the opposition up so they can work their clever psycho-mojo and gently enlighten Perry by…I don't know, wiggling their fingers, thinking happy thoughts, or maybe they're going to use The Force.

Perry is a disastrously bad candidate (as is Bachmann). Call me a radical, but maybe it's a good idea for the opposition to oppose them, openly, and with thorough, rational explanations? And if the candidate is an ignoramus, as Perry clearly is, SAY IT.

And then Vernon perpetrates this nonsense:

The problem is that the Governor, and many like him, subscribe to a type of thinking that embraces hierarchical authoritarianism. People who participate in this form of thinking are not satisfied with the uncertainty that comes from evolutionary science. They need black and white answers…answers that the existing science cannot provide.

Let's see. Perry is an authoritarian who is unpersuaded by science. Isn't this sufficient to convince Vernon that he must be opposed?

And then, basically what he's saying here is that evolution is uncertain. It is not. Evolution is an established fact; Dawkins, no doubt intentionally, chose to make that the focus of the title of his piece, "Attention Governor Perry: Evolution is a fact". There is no uncertainty here. The community of scientists has spoken, and has said repeatedly, in black and white terms, and with near-unanimity that evolution happened.

Vernon is claiming that Dawkins is all wrong because Perry is looking for clarity. But clarity — clarity supported by evidence — is exactly what Dawkins offers. Vernon is full of crap.

What Dawkins does, as do many of us on the side the accommodationists hate, is provide sharp, clear, strong positions. What Dawkins does in that op-ed is play the role of Joseph Welch, confronting wicked folly and stating his position lucidly and with acid contempt for the forces of ignorance and deception.

You've done enough. Have you no sense of decency, sir? At long last, have you left no sense of decency?

If Jamie Vernon had been writing in 1954, he would no doubt have castigated Welch for his harshness, and suggested some compromise…perhaps a few more hearings, helpfully exposing a few more Communists, perhaps asking for a little more respect for the distinguished senator from Wisconsin, Joe McCarthy. Unfortunately for Mr Vernon, history now regards the apologists and the silent as accomplices to a dark period in American government, and the people who spoke up in opposition as the heroes.

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A questions about those ancient bacterial fossils…

Both Jerry Coyne and Larry Moran have good write-ups on the recent discovery of what are purportedly the oldest fossil cells, at 3.4 billion years old. I just have to add one little comment: a small, niggling doubt and something that bugs me about them. All the smart guys are impressed with this paper, but this one little thing gives me pause.

I'm a microscopist — I look at micrographs all the time, and one of the things I always mentally do is place the size of things in context. And I was looking at the micrographs of these fossils, and what jumped out at me is how large they are. They're not impossibly large, they're just well out of the range I expect for prokaryotes.

Most prokaryotes have diameters in the range of 1-10µm, while typical eukaryotes are about 10 times that size. There are exceptions: Thiomargarita gets up to 500µm across, so like I say, there's nothing impossible about these cells, it's just that the micrographs show lots of cells with 10-30µm diameters. And the authors come right out and report that:

The size range is also typical of such assemblages, with small spheres and ellipsoids 5-25 µm in diameter, rare examples (<10) of larger cellular envelopes up to 80 µm in diameter, and tubes 7-20 µm across (see ref. 24).

How odd. When I poke into the nervous system of an embryonic insect or fish, those are the sizes of cells I often see (well, except there aren't many tubes of that size!). When I poke into a culture or embryo contaminated with bacteria, they're much, much smaller. So maybe paleoarchaean bacteria tended to be larger? And they do cite a source for that size range of prokaryotes…

Then here's a new problem: the source cited, ref. 24, is the Schopf paper, the older paper that claimed to have found ancient bacterial fossils, a claim that has since been discredited! Uh-oh. What they're calling "typical of such assemblages" is a data set that's widely considered artifactual now. Furthermore, that's a simplified version of what Schopf said — he actually broke the sizes down into categories, and the range was more like 1-30 µm.

  • Very small solitary, paired or clustered rods (ca 0.75 µm broad, ca 1.5 µm long), inferred to be prokaryotic (bacterial) unicells: one unit (ca 2600 Myr old), one morphotype.
  • Small, solitary, paired or clustered coccoids (average diameter ca 3 µm, range ca 2-5 µm), inferred to be prokaryotic (bacterial, perhaps cyanobacterial) unicells: three units (range 3320-2600 Myr old), three morphotypes.
  • Large solitary or colonial coccoids (average diameter ca 13 µm, range ca 5-23 µm), inferred to be prokaryotic (bacterial, perhaps cyanobacterial) unicells: three units (range 3388-2560 Myr old), four morphotypes.
  • Narrow unbranched sinuous filaments (average diameter ca 1.25 µm, range ca 0.2-3 µm), with or without discernable septations, inferred to be prokaryotic (bacterial, perhaps cyanobacterial) cellular trichomes and/or trichome-encompassing sheaths: 10 units (range 3496-2560 Myr old), 17 morphotypes.
  • Broad unbranched septate filaments (average diameter ca 8 µm, range ca 2-19.5 µm), inferred to be prokaryotic (perhaps cyanobacterial) cellular trichomes: four units (range 3496-2723 Myr old), 10 morphotypes.
  • Broad unbranched tubular or partially flattened cylinders (average diameter ca 13 µm, range ca 3-28 µm), inferred to be prokaryotic (perhaps cyanobacterial) trichome-encompassing sheaths: five units (range 3496-2516 Myr old), five morphotypes (e.g. figures 3a-e and 4l).

So Schopf was reporting larger cells in his older samples, and now Wacey et al. are describing what look like very large cells to me in their 3.4 billion year old rocks. I'm not a microbiologist so I could be way off on this, but…isn't this just a little bit strange? Maybe there are some micro people out there who can reassure me that this isn't a surprising result.


Wacey D, Kilburn MR, Saudners M, Cliff J, and Brasier MD (2011) Microfossils of sulphur-metabolizing cells in 3.4-billion-year-old rocks of Western Australia. Nature Geoscience Published online Aug. 21, 20110 [doi:10.1038/ngeo1238]

(Also on FtB)

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The fish rots from the head, the tail, and every place in between

Here's an educational opportunity for everyone!

The Community College of Rhode Island [CCRI] has proudly announced that this fall, a "reiki master" will be holding a seminar on "crystal and mineral healing" at the college. This, we're told, is

…a type of alternative therapy that involves laying crystals or gemstones on the body. Each student will experience a crystal therapy session and get a really good idea about how it changes your energy and rebalances you.

This instructor at CCRI also does "Cranio Sacral Therapy," and uses such advanced quackery as "Bio Magnets," "Light Life Tools," "Dowsing," and "Pendulums" She assures students that she is also a teacher and practitioner of many other alternative healing methods, and says that crystals have their own "intrinsic energy," and will "interact with points on the body's energy field, known as chakras, to promote balance and well-being." "Each crystal has its own properties and attributes when laid on the body with a specific chakra," she says. This collection of talents puts her well up in the tree with the top woo-woos, but she's teaching at CCRI.

Sounds familiar, doesn't it? Colleges all over the place are peddling this nonense, and you can tell how administrators are thinking: it's not about providing a good education, it's all about what the students will pay for…and if they'll pay for cheap, meaningless crap, so much the better for short-term profitability. Oh, and long-term damage to the school's reputation? Let the next chancellor or president or board worry about that.

So someone wrote to the Community College of Rhode Island, and Richard H. Coren, Director of Marketing, Communications and Publications replied.

Let that sink in. A complaint was made about the garbage content of courses at the college, and the Director of Marketing wrote back. Marketing. Damme. Let me tell you, when the academic revolution comes, it's the marketing drones who have the temerity to pontificate on curriculum and content who are going to get shoveled into the "B" Ark first.

Anyway, so Mr Coren, snake-buggering Director of Marketing to Morons, replies:

Students told us they wanted to further their knowledge of alternative healing methods, and the course was designed to introduce students to the practice of crystal and mineral healing. By offering the class, the college and its noncredit arm, CWCE, do not endorse the practice as science; we are simply responding to demand in the community for personal development courses such as this.

It's not alternative "healing". It's not "personal development". It's lies and bullshit. And seriously, there's a point beyond which what students want doesn't matter. My students wish there wasn't a calculus and statistics requirement for a degree in biology; tough. Some students might want a credit for watching a five-minute video on youtube; no way. We're supposed to have standards, and an education is supposed to mean something.

But no, we've got marketing directors who see a fast buck in selling out academic integrity.

Let's not blame only short-sighted bean-counters at the college level, though. Here's what we have to look forward to: pernicious effects of NCLB, a program which neglects science and encourages mindless teaching-to-the-test, has devastated science education.

It is time to acknowledge that there has been an unprecedented and precipitous decline in science teaching and learning as a consequence of the focus and implementation of No Child Left Behind. We do not need any more commissions or studies to tell us what is strikingly evident -- children of the NCLB era, who entered Kindergarten in 2003 and had little or no science education for the next seven years, are not going to do well in science in middle school or beyond. We are losing an entire generation to science illiteracy.

We're already beginning to see the consequences.

In 2009, PISA found that 15-year-old U.S. students ranked 17th of 34 developed countries in science and 25th of 34 in math. The same study revealed that the U.S. has among the most unequal performance in the world, with achievement levels highly dependent on socio-economic status. Low-income and minority communities are especially hard-hit by lack of access to high-quality science resources. The results from the 2009 National Assessment of Educational Progress drive home the severity of the problem - only 18 percent of New York City's 4th graders and 13 percent of 8th graders performed at or above the proficient level in science.

Over the next six years, as "Generation NCLB" goes through high school, we can expect banner headlines about further drops in science learning and fewer students taking advanced level courses in biology, chemistry, and physics. That will be a precursor to the hue-and-cry from colleges, four years later, about the need for more remedial science and the falling number of American students majoring in sciences of all types, and then a renewed clamor from employers who need appropriately educated workers but cannot find them.

Maybe Mr Coren and my university's Center for Spirituality and Healing are being foresighted and wise. They're cultivating the perfect curriculum for a generation of students who lack critical thinking skills, who know nothing about science, and just want to be pandered to with pseudoscience for the gullible.

(Also on FtB)

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